Typical Elective Courses 2016


BME 680 Signals & Linear Systems
CONJ 661 Structure and Function of Biological Molecules
CONJ 670 Foundations of Measurement Science
CONJ 662 Genetic Mechanisms
PHPH 617* Pharmacokinetics

*offered every other year


BME 640 Fluid Mechanics/Biotransport
CONJ 663 Bioregulation
CONJ 671 Analysis in Quantitative Bioscience
CONJ 664 Cell Structure and Function


BME 683 Modeling of Physiologic Systems
CONJ 665 Development, Differentiation and Disease
 CONJ 667 Organ Systems

BME 607 Biomedical Engineering Seminar

Terms: Fall, Winter, Spring
Credit(s): 0         
Instructor(s): Peter Jacobs
(BME Students: 3 terms required)
This seminar course will feature presentations and discussions on topics in biomedical engineering that exemplify the wide range of applications of biomedical engineering to science and medicine. The goals are to provide the students with an overview of the diverse opportunities for research and application, to foster development of critical analysis and thinking, and to stimulate creative problem solving and research planning.


BME 622 Biomed Opt I: Tissue Optics

Credit(s): 3
Instructor(s): Steve Jacques, Summer Gibbs, Xiaolin Nan
Light propagation in tissue: This course treats light transport in scattering and absorbing media such as biological tissue. Light transport is modeled using a variety of theories and computational techniques, including Monte Carlo simulations and approximate solutions of the radiative transport equation. Steady-state and time-dependent problems are treated. Spectroscopy and fluorescence measurements are introduced. Optical imaging techniques are presented. Students learn the basics required for design of optical devices for therapy and diagnostics.


BME 623 Biomed Opt II: Laser Tissue Interactions

Credit(s): 3
Instructor(s): Steve Jacques, Summer Gibbs, Xiaolin Nan
The course treats the immediate physical processes that accompany the absorption of light by biological tissues, including photochemical reactions, heating and tissue coagulation, vaporization, creation of plasmas, and production of stress waves in tissue. Such processes are modeled using finite-difference techniques. Applications in medicine and biology are discussed. Prerequisite: BME 622 Biomedical Optics I, or permission of instructor.


BME 624 Biomed Opt III: Eng Design

Credit(s): 3
Instructor(s): Steve Jacques, Summer Gibbs, Xiaolin Nan
The students work as a team in preparing five business plans throughout the quarter. Each business plan is devoted to a potential medical device or protocol using optical technologies. The team is divided into a CEO, scientific officer, marketing manager, regulatory affairs manager, and manufacturing manager. The roles are rotated amongst the students for each business plan. Feasibility studies are conducted in a laboratory exercise designed by the students. The team formally presents a business plan every two weeks. Prerequisite: BME 623 Biomedical Optics II, or permission of the instructor.


BME 640 Fluid Mechanics/Biotransport

Credit(s): 3
Instructor(s): Sandra Rugonyi
This course will introduce basic concepts of fluid mechanics and convective mass transport. It will start with a derivation of mass, momentum and energy conservation equations for fluid flows. The importance of non-dimensional parameters such as Reynolds number and the Womersley parameter will be extensively discussed, and non-dimensional equations will be derived. Other topics will include Bernouilli's equation, low and high Reynolds number flows, oscillatory flows, interactions of fluid flows with tissue and boundary layers. The final part of the course will cover the derivation and use of mass transport equations in fluid flows. Examples from different areas of biomechanics will be discussed throughout the course.

As part of this course, each student will be asked to work on a project. Students will be encouraged to choose project themes from their own research areas or interests. Access to a finite element commercial package will be available for interested students. Through the project, students will be exposed to current analytical and computational methodologies to analyze fluid flow dynamics.


BME 645 Biocompatibility: Host-Implant Interactions

Credit(s): 3
Instructor(s): Monica Hinds
This course will provide students with a firm understanding of how biomaterials are developed; how the body reacts to implanted biomaterials at the cell, tissue, organ, and systematic levels; and how advanced imaging techniques are utilized to study host responses. Specific characteristics that hinder or improve the biocompatibility of materials will be addressed.       


BME 680 Signals and Linear Systems

Credit(s): 3
nstructor(s): Peter Jacobs
This course will teach students the core principals of digital signal processing within a biomedical engineering applications framework. Specifically we will cover the core topic areas in digital signal processing including an overview of discrete-time signals and systems, the discrete-time Fourier transform, the z-Transform, the discrete Fourier Series, the discrete Fourier transform, circular convolution, network structures for FIR systems, design of IIR and FIR filters. If time permits, we will also provide and introductory lecture on the Kalman filter and the extended Kalman filter.


BME 682 Nature & Analysis of Bio Signaling

Credit(s): 3
Instructor(s): Peter Jacobs
This course will explore, from an engineering perspective, the physiological origins and characteristics of signals that are used medically to monitor patient functions and scientifically to study biological systems. The signals will include arterial and venous blood pressures, electrocardiogram, electroencephalogram, electromyogram, peripheral nerve action potentials and pulse oximetry. Topics will include physiological signal generators, instrumentation, signal processing, and modeling of biological systems. The format will include lectures, lab demonstrations and visits to clinical facilities. Prerequisite: EE 680


BME 690 Topics in Nanomedicine

Credit(s): 3
Instructor(s): Wassana Yantasee, Tania Vu
Nanomedicine involves the development and application of materials and devices to study biological processes and to treat disease at the level of single molecules and atoms.We will introduce basic principles underlying nanomedicine and review how nanomedicine is redefining clinical research in areas such as diagnostic imaging agents, nanomaterial-based drug delivery, and nanoscale proteomics.Specific attention will be directed to disease processes including: cancer, kidney, and neurodegenerative

PSU courses available for OHSU Students